Thursday, May 16, 2024

-- An Example Worth Knowing --

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Medical test diagnoses are just one example (but an important one) of how difficult or tricky it is to understand logical probabilities; in fact it’s well-known that doctors themselves often fail in their understanding of medical test results. One, of many, common examples often given in chapters on Bayesian or conditional statistics runs along these lines:


Suppose 1% of 40-year-old women have breast cancer. And suppose a certain mammography machine correctly diagnoses breast cancer 90% of the time (i.e., IF a woman has breast cancer there is a 90% chance the machine will say so). Suppose the same machine has a 10% chance of giving a false-positive — it says a woman has breast cancer but she does NOT. 

Suppose now, Mary, a 40-year-old woman, goes in for a regular mammography screening and the machine indicates she has breast cancer. What is the probability that she actually does?

People (including doctors) often think there must be close to a 90% chance she is afflicted with cancer. In actuality, it is closer to an 8% chance!

The initial math is not all that difficult:

1% of 40-year-old women have breast cancer, so out of say 1000 such women who go in for testing, ~10 will actually have the disease, on average, and 990 will not.

The machine has 90% accuracy so of those 10 with cancer the machine will diagnose 9 of them correctly (but miss one).
Of the 990 without breast cancer the machine will yield a false-positive on 10% of them, or 99 women.

Thus, out of 1000 original women tested, a total of 108 (9 + 99) will test positive for breast cancer, though only 9 will actually have it.

9 out of 108 (positives) turns out to be a final accuracy rate for a positive result of ~8.3%. THAT is the likelihood, from this one screening, that Mary truly has breast cancer (it is unfortunate how much fear and anxiety such tests automatically generate -- this goes for a number of other medical tests as well). [Note how things would change IF the machine gave NO false-positives (but all do).]

The above is just the basic, rough (but noteworthy) math of the given situation — there are plenty of other variables to consider: any known genetics of the patient or relevant past family history, or current pertinent physical or physiological results. But I’m using the example solely to portray how easily our common sense or intuitions mislead us. The problem is that people automatically assume a "90% accuracy" rate means that any given result has a 90% chance of being true, when in fact a larger context with more conditional factors must be brought into consideration when looking at any single case... and guess what, that's almost always true in life.————————————————

ADDENDUM:   For readers surprised by these numbers I ought further explain that this sort of confusion is commonplace for “screening” tests, which are employed to find candidates for further “diagnostic” testing or examination that is more specific for the condition being investigated (anytime a doctor orders a test for you always worth asking if it is a screening test OR a diagnostic test — perhaps most major ailments these days have both).


Tuesday, May 14, 2024

— More of Same —

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Jim Simons, one of the true titans of quantitative research, in mathematics and investment strategies, died a few days ago. Not too unexpected, at the age of 86 and a lifelong smoker, but still a tremendous loss of a brilliant thinker, creator, and philanthropist.  Not too relevant here, except that it comes at a time when I am bemoaning the ‘quality’ of research in the Ivory-bill arena (and elsewhere).


…and so more IBWO auditory analysis appears from John W. First off, will just say that if John honestly believes his “scientific” work is soooo excellent (including his South Carolina storyline) he really should get one of the 100s of university or PhD.-level biologists or ornithologists out there, to work with him as a co-author — it could boost his credibility, and such people are always looking for opportunities to publish fresh material… in fact such academics ought be knocking down John’s door hoping to collaborate on all this monumental study — except that I’m doubtful there is even one such individual in the entire country willing to associate with this work and add their name to it….


Won’t get into a long, hopeless back-and-forth about all the problems (mostly of weak assumptions, circularity, and skewed samples) involved in yet another spectrogram paper (or, will it be retracted?), but will say that the main conclusion I can draw from it is that there exists some creature (not even necessarily a bird) that exists in Florida woodland (that the data is heavily skewed to) and possibly other woods, that makes kent-like sounds with a 587 Hz harmonic (p.s... I don’t know how the specific subset of Florida datapoints used in the paper were selected out of the 100s actually recorded in the Choctaw.?). And perhaps ARUs run for a couple of weeks in Maine, Michigan, Canada, or Timbuktu, would also pick up such kent sounds? Who knows? John can speculate why that harmonic (from unknown creatures, no matter how much he wants to insist they must be IBWOs) is different from the only actual IBWO sounds that have ever been recorded (from the Singer Tract) or from the excellent work done by Cornell in the Big Woods, but no one really knows for sure.  A frequent assumption is made that the Singer Tract birds are giving different call notes because they are recorded while their nest site is being disturbed; certainly plausible, but it would be a stronger argument if data actually showed that the Hz of calls from other large birds (waterfowl, crows, raptors, even other woodpeckers) indeed change similarly when recorded at intruded nest sites versus in open field — perhaps that has already been done, or at least the data might be available, but I’ve not seen it. And hey, maybe IBWO kents are slightly different on cloudy/rainy days than on bright/sunny days, or different when mates or juveniles are nearby rather than distant, or different when they're very hungry versus chock-full, or, or, or.... the potential variables in field biology are enormous.


And what IF the 587 figure is REAL?… do we now just ignore or toss out recordings of kents starting at say 660 and above, even if they accompany sightings, because surely they must be bogus? Or do IBWOs have an entire range of kent sounds or regional 'dialects', or are they morphologically-constrained to 587? 

Just scanning over the limited data John presents, what strikes me is the variability of the Hz presented -- could be just different bird genders, ages, circumstances, or other factors, but the point is it lends me little confidence in what the 587 "average" even really means -- and no descriptive statistics are run on those values to give a better clue to that variability (eyeballing it, it looks like a possible range from roughly ~560 to 610?) in his cluster of interest -- just a simplistic histogram intended to imply some significant result. 

To some extent John's emphasis is really not on the 587 figure but on the harmonic structure of the kents. What is far more interesting to me is the clear discrepancy though between the lower Hz values of the Florida and Big Woods, AR. birds -- which may not be so easily explained away (though John attempts to, even after originally implying that fixed morphology alone will constrain the variability of kent calls). John thinks he has lumped together an array of putative Ivory-bill calls for this study, but in fact he may have essentially lumped together apples and oranges (while perhaps deliberately leaving out some key ones). It's just hard to know for sure. He thinks he's building a logical argument, but the underlying assumptions make it more like a shaky house of cards.


In the Ivory-billed debate I don't expect the level of quantification, precision, or critical thinking found in the work of Jim Simons.... but I do expect better than what is often served up these days.

The more and more and more sounds that are claimed to be from Ivory-bills over time, in more and more places, the more outlandish it appears to critics that we can not find a single bird to clearly (not beautifully, just clearly) photograph; can not find a single active roosthole, nesthole, or foraging site, for a bird that keeps eating, sleeping, perching, day after day after day (not to mention kenting and double-knocking), and breeding year after year after year. And so it goes (there are some possible explanations for all this, but I do understand the frustration of skeptics).


IF the Ivory-billed Woodpecker is extinct, the prolonged saga of this bird is an example of poorly-done science…. but just as true, if the Ivory-billed Woodpecker does exist, its seemingly never-ending narrative offers ongoing examples of similarly-weak science (...with that said I will look forward to any future evidence and drone footage from the Latta group in La. -- Steve Latta speaks to a gathering later this month and perhaps will have an update from any winter efforts).


Finally, frankly, for the moment, we barely need more research (it's reached a stage of being idle, speculative chatter by now) on the Ivory-billed Woodpecker, on its behavior, its biology, its habitat, its diet or voice or wing-flap rate…. we need good, detailed sightings and photos/video… we already have the equipment, the potential manpower and abilities to get that, but yeah, it ain’t easy, nor cheap! —  (might even require a large team of dozens of searchers -- I tire of hearing from the solo wannabes with their plans/chutzpah to go to location XYZ for a few days and accomplish what no one has done in 80 years)… and worse, the scoffing and mockery that now shadow anyone thinking of attempting the task, discourages most from even mounting an effort. So here we be. If Cornell, with all their background, experience, equipment, knowledge, couldn't pull it off, how do we expect any John Q. Public to do it, except by fortuitous, freaky chance.

So I'll let Jim Simons have the last word, for as much of a nerdy, hard-working, successful quant as he was, he nonetheless noted simply, “Luck plays a meaningful role in everyone’s lives”…. in the Ivory-bill arena what we badly need right now is not more research but more luck!


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Thursday, May 09, 2024

-- Summer Ahead --

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Not sure there will be much significant IBWO news through the summer 😦 so, in between yawns, may just start posting a few other things I find interesting, entertaining, or otherwise worthwhile. 

....beginning with some references on ‘logical fallacies’ and ‘cognitive biases’:


https://www.grammarly.com/blog/logical-fallacies/

https://en.wikipedia.org/wiki/List_of_fallacies

https://www.scribbr.com/research-bias/cognitive-bias/

https://en.wikipedia.org/wiki/List_of_cognitive_biases


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Thursday, May 02, 2024

— Help With A Research Study Requested (not specific to IBWO) —

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A Canadian reader, birder, and neuroscientist (University of Toronto) writes me to ask for help with their current research study of the effects of birding skills on the brain. The study is online here (requiring ~15+ mins. of time, and “open to all” of any background or experience):

https://birdingstudies.com

The writer notes, in part, “this study is part of our wider project of connecting birding and citizen science activities with research on cognitive health and brain function. At the population level, we're exploring how trends in species prevalence (e.g. as quantified via eBird) correlate with geographic trends in how people process birds. At the smaller scale, we have a line of neuroimaging research looking at beneficial changes to brain structure and function that result from decades spent learning about birds.”

Please participate if you have the time (a raffle for binoculars is included for participants).

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Tuesday, April 23, 2024

— Summer Beach Reading Perhaps? —

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With winter search season largely over, no telling how long we’ll go without significant news… so if you’re looking for summer reading (and you’re into fiction) here are 7 old novels that have the Ivory-billed Woodpecker as a main character or focus:


The Lord God Bird” by Tom Gallant 

The Life List of Adrian Mandrick by Chris White

AVES — The Age of Engagement by C.J. Berry

"The Elvis Bird" by D.E. Woolbright

Ivory Hunters by Gregory Lewbart

"Of The Wing: The Ivory-billed Obsession" by Georgia Anne Butler

The Lord God Bird by Russell Hill 


Also saw an idea on Twitter recently that I liked for someone with a creative-writing flair: do a novel about a birdwatcher who goes off in search of the Ivory-billed Woodpecker only to not be seen again (the birdwatcher)… can imagine all sorts of twists and turns for that storyline! (and then the movie with Richard Dreyfuss in the lead, entitled 'Close Encounters of the Bird Kind' ;)

…OR, here’s another one: a novel about a blogger, obsessed with this species, who’s skeletonized body is found slumped at his computer keyboard after going 23 days and nights without food or water while pouring over clear, definitive photos sent to him by a Pascagoula, Mississippi moonshiner named Bubba. ;)  (this one called perhaps, "The Blogfather," starring Al Pacino)....


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Sunday, April 21, 2024

— Sunday Meditations —

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With nothing new to report, will just reach into past Aprils for some old thoughts:


This was a bit of Jerry Jackson commentary here from April 2006:

https://ivorybills.blogspot.com/2006/04/more-commentary-from-j-jackson.html


…and some passages I first used as a “Sunday Meditation” in April 2008 (not specific to IBWO) from astronomer/writer Chet Raymo in his 2003 book, "The Path: a One-Mile Walk Through the Universe”:


         "...however one chooses to romanticize what in retrospect seems a fetching life, it is impossible to reclaim it... Technology -- with its awesome potential and perils -- is here to stay.

         "The inventory of Earth's living species currently stands somewhere near 2 million. There are almost certainly at least ten times as many species that have not yet been described and named --- the true number of species may be more than 100 million. Many of these are inevitably doomed by human population growth....

          "All life --- the whole glorious parade along the path --- depends upon the photosynthesizers... With the invention of photosynthesis, life plugged into a star, and the battle against entropy was won. The universe continues to run down, as it must, but on the surface of the earth there spreads out a film of highly ordered matter of marvelous complexity and resourcefulness. The one-celled organisms that ruled the Earth 3 billion years ago were no more advanced than the scum that lives on our shower curtains, but that scum had evolved the ability to make carbohydrates with sunlight... Animals developed along a different branch of the evolutionary tree, and it seems unlikely that you and I had photosynthesizers among our ancestors. But the tree of life is a web of interdependence. Green leaves are our necessary link to our yellow star.

         "...The Arcadian ideal of humans living in harmony with tamed nature did not begin with Frederick Law Olmsted, Capability Brown, or even the supposed Peloponnesian paradise itself (witness the more ancient myth of the Garden of Eden), nor was it discredited by the obscenities of the twentieth century's wars, the Great Depression, or the grimmer excesses of technology. It is a sturdy old myth, and in it we might still hope to combine the Enlightenment, with its confidence in the power of the human mind to make sense of the world, and romanticism, with its belief that all of life is a miracle. Along the one-mile walk of the path, I have found these ostensibly competing tendencies happily fused: order and surprise, artificial and natural, civilized and wild, human self-interest and organic wholeness.

          "....About half of the earth's land surface is presently exploited by humans, and all of the land and water surface is touched in some way by the waste products of human cunning...

         "The technological products of human ingenuity represent an inevitable stage in planetary evolution, yet our Arcadian yearnings are dictated by millions of years of pretechnological human evolution. It is a conundrum of human life that our intellects have outraced our instincts; cultural evolution has overtaken organic evolution. Biologically, we are hunter-gatherers who suddenly find ourselves in command of almost unimaginable powers for planetary transformation."


         ....and lastly this thought from E.O. Wilson:

          “If all mankind were to disappear, the world would regenerate back to the rich state of equilibrium that existed ten thousand years ago. If insects were to vanish, the environment would collapse into chaos."

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Friday, April 12, 2024

— Just Miscellany — +Addenda

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On the bright side:  I had figured out a somewhat cumbersome, convoluted way of viewing tweets on Twitter without having an account there, but a reader (thank you) sent me a simpler means of doing so, so now I can check on @ibwo_discourse or anyone else when I wish.

Matt Courtman will be holding another monthly (free) Zoom meeting this coming Monday night at 7:30 EDT.

Someone recently asked on Facebook if there’d been much searching in Western Tennessee (and specifically bringing up the Chickasaw Wildlife Refuge). Historically, there were no confirmed reports of Ivory-bills in TN., but in their 2007 report, USFWS did mention 4 areas of the state of possible interest (all in the far west, bordering Arkansas): certain parts along the Hatchie River, Meeman Shelby State Park, Reelfoot Lake area, and yes, the Chickasaw National Refuge. I’ve often cited Bill Pulliam’s enticing reports of possible IBWO at the Moss Island Refuge (which seems on the smallish size, but is close to the larger Chickasaw Refuge). His main posts are HERE and HERE. I could never tell for sure if Bill was toying with his readers over Moss Island, since he never returned for more extensive searching (perhaps? hindered by money and time), but as I’ve reported here before, when I once specifically pressed him if he seriously believed Ivory-billed Woodpeckers resided there, he simply said that IF they did they deserved to be left alone, having survived this long on their own [he didn't particularly encourage folks to go look there, but nor discourage them]. In any event I know of no more recent searches/encounters with IBWO in these areas in subsequent years. BUT yes, western TN., as well as slivers of southeast Missouri and southern Illinois interest me, specifically because of the scarcity of searching ever done there (and a few oddball reports) versus prominently mentioned areas (where more claims come from, but followup searches mostly fail over and over).

As a sidenote will just mention that author Sam Keen, in one of his books, tells the story of growing up around Pikeville, TN. in 1942 (much farther to the east in Tennessee) and as a young birdwatcher being told that a locally shot bird is an Ivory-bill (which he buries) — he admits it was surely more likely a Pileated, but still is haunted a bit all these years later by what the grownups, probably not credibly, insisted at the time.

All of which reminds me a tad of how in philosophy or logic they talk about “necessary and sufficient” conditions for a statement to be true. These days I keep looking for Ivory-bill evidence that is “significant and credible.” Evidence sometimes floats around that might be significant if only one could vouch for its credibility & accuracy… and vice-versa, there are sometimes assertions made which are credible, but which are more rehash or repetition than truly new or significant. Getting “significant and credible” together is a bit of a challenge :(

Otherwise, from the Dept. of Marching-Around-In-Circles I see this discounted photo from almost 20 years ago re-surfaced... yet... again... on YouTube last week; I guess the creator can take pride in the staying-power of his handiwork. Oy:


...and finally, to go from the ridiculous to the sublime (or maybe in this case the other way around?), Chuck Hunter recently linked to an article on the "Birds Aren't Real" movement:

https://slate.com/news-and-politics/2024/04/birds-arent-real-gen-z-politics-mcindoe-adam-faze-fifty-stars.html

Chuck calls the article "intriguing" by which I assume he means 'God help us all!'.

(nothing IBWO-related in the piece, except for peoples' apparent love for, or gravitation toward, conspiracy theories)

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ADDENDUM 4/15:

Will just mention that Hannah Hunter, who I previously wrote of for her piece specific to the Ivory-bill, is back with a co-written article on the "audiovisual afterlives" of the IBWO and a mammalian species, the Bucardo:

https://www.tandfonline.com/doi/pdf/10.1080/24694452.2024.2304206


...and now, ADDENDUM to the Addendum:  Hannah is on a new short podcast about the same topic here:

https://www.youtube.com/watch?v=tMWDpLSKIeY


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ADDENDUM 4/19:


A heads-up (especially for any nearby to the locale)… the Pennsylvania Society for Ornithology 2024 Birding Festival will be held in Washington, Pa. from May 31 - June 2:

https://pabirds.org/2024-schedule/


On Saturday, June 1, Steve Latta is scheduled to share the evidence from their Louisiana study and argue for the persistence of the IBWO ”based on a variety of data collected over a 10-yr search period, 2012-2022” 

??? does that mean he’ll have nothing from 2023 (or for that matter 2024) to share; guess we'll find out in a few months.


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Monday, April 08, 2024

-- Eclipse Day --

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This morning at 11:29am. Joseph Q. Smeddley of Fargo, ND. became the one millionth visitor to this blog, thus winning a 2024 Lamborghini Revuelto! ;)


OK, so ummm that’s not exactly true, but Google does claim 1 million hits here as of a few minutes ago (...though there are so many sock-puppets running loose in IBWO-land these days, the million hits might only represent a couple dozen people! 😳). Anyway, with any luck there may be a clear photo of a living Ivory-bill before we hit the 2 million mark. Maybe...


Otherwise, the day is auspicious of course because of a certain amazing configuration of the Earth, Moon, and Sun forthcoming. How thoroughly unlikely that such a bizarre geometrically-precise arrangement can even occur! (...skeptics might dare even call it impossible ;)). Just a sorta reminder that Nature is full of improbabilities!! 😉


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